QTL Viewer
QTL analysis for the web
Interactive genome-wide LOD plots, mediation analysis and SNP association across published Diversity Outbred and Collaborative Cross mouse datasets.
Developed by The Churchill Lab at The Jackson Laboratory
Browse datasetsWhat it does
Features
QTL Analysis
Real time QTL analysis can be performed with an interactive genome wide LOD plot.
Mediation Analysis
Identify candidate mediators by conditioning the QTL on the genotype probabilities of each gene. The strongest candidates are the ones that cause the largest drop in LOD score under the conditioned model.
SNP Association
SNP association analysis shows the SNP LOD scores on top and the genes at the corresponding genomic positions below.
Built with
Technology
We utilize the following technologies.
Python
The web framework
R
Number crunching and analysis
Docker
Container to run anywhere
Bootstrap
Fluid HTML layout
Get started
Documentation
User Guide
Deployment
Open data
Datasets
Every dataset below runs in a live QTL Viewer. Expand one for its viewer address and its publications.
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